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Table 2 Genes significantly regulated during parasitic infections in resistant cattle.

From: Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle

ID Symbol

BTA

Start

End

Ratio

P value FDR

Resistant RPKM

Susceptible RPKM

BT23148 ACCN3

Chr4

117903455

117907312

12.73

0.000 0.0000

3.97 ± 6.61

0.27 ± 0.06

BT15243 ANPEP

Chr21

20951416

20967921

11.08

0.000 0.0000

40.93 ± 28.64

3.67 ± 0.80

BT22521 APOA1

Chr15

25933779

25935362

5.98

0.000 0.0000

5360.53 ± 1986.27

895.53 ± 533.24

BT12506 SPLUNC2A

Chr13

63394161

63402279

57.68

0.000 0.0000

4.80 ± 6.20

0.10 ± 0.10

BT25183 CSMD2

Chr3

118882335

119566628

9.58

0.000 0.0000

1.23 ± 0.65

0.13 ± 0.06

BT22188 CYP4B1

Chr3

106240610

106260595

7.21

0.000 0.0000

4.67 ± 1.85

0.63 ± 0.15

BT26217 DUOX2

Chr10

66934451

66952107

12.47

0.000 0.0000

10.27 ± 14.53

0.87 ± 0.55

BT27848 FABP6

Chr7

71616618

71622552

8.34

0.000 0.0000

20.10 ± 29.36

2.23 ± 0.45

BT22964 ITLN2

Chr3

9558554

9565419

51.98

0.000 0.0000

18.37 ± 29.41

0.37 ± 0.47

BT19368

Chr25

4742693

4775217

6.96

0.000 0.0000

82.73 ± 63.48

11.77 ± 8.64

BT10244 PRSS2

Chr4

110025504

110029213

57.68

0.000 0.0000

17.93 ± 30.63

0.37 ± 0.23

BT28349 SLC6A18

Chr20

75154396

75168950

8.28

0.000 0.0000

18.87 ± 13.67

2.27 ± 0.70

BT11110

Chr13

59373661

59378915

5.86

0.000 0.0000

36.77 ± 10.25

6.30 ± 1.87

BT18264

Chr2

124281340

124288387

8.94

0.000 0.0000

2.87 ± 2.00

0.33 ± 0.12

BT26677 MRP4

ChrUn

841

156276

8.00

0.000 0.0000

12.37 ± 11.34

1.50 ± 0.78

BT29561

Chr10

66930244

66933576

22.63

0.000 0.0000

17.40 ± 27.38

0.83 ± 0.49

BT16567 APOA4

Chr15

25908269

25910771

4.44

0.000 0.0000

2075.70 ± 1258.45

466.47 ± 179.94

BT20816 APOC3

Chr15

25916846

25918590

4.59

0.000 0.0000

1467.53 ± 591.47

319.20 ± 105.66

BT20772

Chr6

87416154

87458606

5.54

0.000 0.0000

6.30 ± 5.07

1.13 ± 0.32

BT16522 MS4A10

Chr29

38877233

38884049

4.79

0.000 0.0000

75.00 ± 16.71

15.73 ± 4.97

BT13412 APOB

Chr11

80208992

80221450

4.41

0.000 0.0000

166.77 ± 21.11

37.80 ± 13.65

BT25015 ISG15

Chr16

48718864

48719323

4.47

0.000 0.0000

61.67 ± 35.27

13.63 ± 6.02

BT13211

Chr2

124265402

124268318

4.14

0.000 0.0001

149.53 ± 65.38

36.03 ± 13.41

BT26247 MAPK11

ChrUn

21657

24311

4.11

0.000 0.0001

37.87 ± 24.23

9.03 ± 4.17

BT16178

Chr23

17665934

17668511

5.06

0.000 0.0001

6.90 ± 3.24

1.30 ± 0.36

BT10335 CD36

ChrUn

11614

40612

3.97

0.000 0.0001

78.23 ± 52.91

19.73 ± 4.58

BT29523

Chr28

1263980

1431674

4.56

0.000 0.0002

3.07 ± 0.38

0.67 ± 0.64

BT30176 AKR1C3

Chr13

43830404

43853848

4.23

0.000 0.0002

14.237 ± .61

3.40 ± 0.26

BT16664

ChrX

70843101

71124091

5.28

0.000 0.0003

4.87 ± 5.93

1.03 ± 0.86

BT21051

Chr26

16748567

16803178

3.76

0.000 0.0004

26.30 ± 9.04

6.97 ± 1.55

BT28260

Chr16

48526316

48530064

4.26

0.000 0.0006

7.43 ± 2.64

1.67 ± 0.72

BT10100 KLRJ1

Chr5

106747081

106756866

3.68

0.000 0.0009

16.73 ± 6.80

4.37 ± 2.66

BT23076 HABP2

Chr26

34481504

34515729

3.84

0.000 0.0009

6.30 ± 4.06

1.57 ± 0.71

BT14255 RHOD

Chr29

46952791

46962446

3.92

0.000 0.0009

18.20 ± 13.04

4.67 ± 1.69

BT27136 MUC12

Chr25

37794638

37851653

3.41

0.000 0.0014

651.97 ± 214.37

191.10 ± 21.35

BT25367 TMEM151A

Chr29

46232359

46233687

4.11

0.000 0.0015

3.80 ± 3.18

0.83 ± 0.40

BT22967 LAMB3

Chr16

71833965

71874951

3.39

0.000 0.0016

18.07 ± 7.98

5.30 ± 1.35

BT18107

ChrUn

25167

25761

3.39

0.000 0.0016

54.57 ± 39.67

15.50 ± 23.47

BT22962 PMP22

Chr19

33646745

33669580

3.29

0.000 0.0031

70.67 ± 30.81

21.30 ± 3.36

BT12589

Chr26

9064853

9107531

3.23

0.000 0.0042

21.07 ± 11.38

6.50 ± 3.35

BT20448 STYK1

Chr5

106284244

106301611

3.41

0.000 0.0052

7.07 ± 2.12

1.97 ± 0.83

BT27305 CR2

ChrUn

83330

107409

3.66

0.000 0.0061

3.00 ± 2.87

0.77 ± 0.15

BT23649 UBD

Chr23

29024538

29026285

3.14

0.000 0.0063

48.37 ± 31.81

14.97 ± 7.41

BT21042 CLCA4

Chr3

61006123

61036756

3.03

0.000 0.0067

89.97 ± 36.33

29.57 ± 21.61

BT16585 GDPD2

ChrX

49832662

49839846

3.07

0.000 0.0071

32.20 ± 3.57

10.43 ± 1.76

BT18095 IFI27

Chr21

59045145

59052921

2.99

0.000 0.0092

109.67 ± 95.80

36.37 ± 13.02

BT23509 RSAD2

Chr11

92861557

92877381

3.20

0.000 0.0104

10.27 ± 3.46

3.17 ± 0.99

BT17415 TMEM37

Chr2

74700175

74705806

4.20

0.000 0.0107

5.53 ± 3.86

1.30 ± 0.66

BT22660 SLC7A8

Chr10

21975064

22025425

3.20

0.000 0.0119

6.20 ± 1.61

1.93 ± 0.35

BT29929

Chr10

35876816

35888464

2.91

0.000 0.0128

214.37 ± 116.87

73.60 ± 3.59

BT23760 IFI27L2

Chr21

59033630

59035497

2.95

0.000 0.0136

161.83 ± 67.72

55.17 ± 21.09

BT29480 APOC2

Chr18

52441529

52442339

3.66

0.000 0.0152

15.27 ± 8.78

4.43 ± 1.44

BT14554

Chr19

49340980

49341417

2.89

0.000 0.0263

38.03 ± 26.47

12.97 ± 4.14

BT26136 RCAN1

Chr1

327957

337475

3.05

0.000 0.0265

16.73 ± 4.79

5.60 ± 2.16

BT30154 FLVCR2

Chr10

89235896

89375608

2.87

0.000 0.0309

7.97 ± 1.66

2.73 ± 0.68

BT14279 ACE

Chr19

49341698

49380229

2.71

0.000 0.0315

55.47 ± 25.96

20.50 ± 4.80

BT10643 TRPV6

Chr4

110136393

110152623

3.18

0.000 0.0330

3.73 ± 1.35

1.30 ± 0.95

BT22748 SAMD9

Chr4

10706910

10711652

2.75

0.000 0.0396

5.33 ± 3.53

1.93 ± 0.15

BT24262 BoLA

Chr23

27786581

27806088

2.69

0.000 0.0407

59.40 ± 56.51

21.70 ± 7.07

BT12279 CYP3A4

ChrUn

25739

84849

2.71

0.000 0.0407

13.80 ± 5.60

5.00 ± 2.23

BT14013

Chr2

124213765

124262789

3.25

0.000 0.0407

1.83 ± 1.33

0.57 ± 0.23

BT13301 SECTM1

Chr19

51927819

51929433

2.73

0.000 0.0408

34.83 ± 22.23

12.57 ± 6.56

BT20562 UNC13C

Chr10

56622366

57047991

2.93

0.000 0.0461

2.47 ± 3.58

0.90 ± 0.20

BT17441 GGT1

Chr17

74684303

74693673

2.62

0.000 0.0473

35.97 ± 21.37

13.60 ± 5.19

  1. 64 of 203 differentially expressed genes at a false discovery rate FDR <5% are listed.
  2. The numbers denote mean ± SD (N = 3). Ratio = normalized read counts of resistant animals divided by normalized read counts of susceptible animals. RPKM = reads per kilobase of exon model per million mapped reads. BTA = Bos taurus autosome (chromosome).
  3. *Read count ratio = normalized read counts of resistant animals (Low-EPG) divided by normalized read counts of susceptible animals (High-EPG). **mean ± SD. RPKM = reads per kilobase of exon model per million mapped reads [14].
  4. BTA = Bos taurus autosome (chromosome).