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Table 1 BLASTn retrieval of Helicobacter pylori gene sequences

From: Did transmission of Helicobacter pylori from humans cause a disease outbreak in a colony of Stripe-faced Dunnarts (Sminthopsis macroura)?

BLASTn Retrieve

GenBank accession number

Score (bits)

Identity

E-values

Helicobacter pylori clone P13 16S ribosomal RNA gene

EF684928.1

699

100%

0.0

Helicobacter pylori strain CD2 16S ribosomal RNA gene

HM243132.1

699

100%

0.0

Helicobacter pylori strain HP504 16S ribosomal RNA gene

GU449115.1

695

100%

0.0

Helicobacter pylori v225d 16S ribosomal RNA gene

CP001582.1

695

100%

0.0

Helicobacter pylori strain 407D5 16S ribosomal RNA gene

HM099656.1

695

100%

0.0

Helicobacter pylori strain 15818 cytotoxin associated protein III (cagA) gene

AF083352.1

1288

96%

0.0

Helicobacter pylori NCTC 11639 CagA (cagA) gene

GQ161099 .1

1282

96%

0.0

Helicobacter pylori strain 114C UreA (ureA) gene

GQ403154.1

630

96-98%

3e-164 1e-177

  1. Helicobacter genus-specific PCR products derived from Dunnart gastric DNA extracts were compared with the H. pylori Genbank sequences listed in the Table. The Dunnart samples exhibited 100% sequence identity with 16s rRNA from five human clinical isolates of H. pylori, and 96-98% sequence identity with cagA and ureA from two human clinical isolates of H. pylori.