A phylogenetic analysis of Bovine Viral Diarrhoea Virus (BVDV) isolates from six different regions of the UK and links to animal movement data

Table 3 Reference strains used in this publication

Reference strain name	Type	N^pro& 5′UTR available?	5′UTR GenBank accession number	N^proGenBank accession number	Reference
NADL	1a	Yes	M31182⁺	M31182⁺	[28]
SD1	1a	Yes	M96751⁺	M96751⁺	[29]
28-1	1a	No^#	AF298061	-	[10]
Osloss	1b	Yes	M96687⁺	M96687⁺	[30]
24-15	1b	Yes	AF298060	AF287280	[10]
P	1b	Yes	AF298070	AF287288	[10]
T	1b	yes	AF298072	AF287289	[10]
Bega	1c	Yes	AF049221⁺	AF049221⁺	Direct submission to GenBank
B666 Mogilla	1c	No	JQ743605	-	[31]
B701 Crookwell	1c	No	JQ743606	-	[31]
B702 Grafton	1c	No	JQ743607	-	[31]
16-111	1d	No	AF298056	-	[10]
F	1d	Yes	AF298065	AF287284	[10]
871	1d	No	-	AF144462	[16]
721	1d	No	-	AF144463	[16]
10-84	1e	No^#	AF298054	-	[10]
20-V661-2	1e	No^#	AF298058	-	[10]
3186V6	1e	Yes	AF298062	AF287282	[10]
26-V639	1e	No	-	AF287281	[10]
J	1f	Yes	AF298067	AF287286	[10]
R	1f	No	AF298071	-	[10]
W	1f	Yes	AF298073	AF287290	[10]
A	1g	Yes	AF298064	AF287283	[10]
L	1g	Yes	AF298069	AF287287	[10]
G	1h	Yes	AF298066	AF287285	[10]
KM	1h	No	AF298068	-	[10]
23-15	1i	Yes	AF298059	AF287279	[10]
KS861-ncp	1J	Yes	AB078950⁺	AB078950⁺	[32]
Deer_GB1	1J	No	-	U80902	[5]
M1515A	1J*	No	U97429	-	[33]
M065B	1J*	No	U97409	-	[33]
SuwaCp	1k*	No	AF117699	-	[34]
Rebe	1k*	No	AF299317	-	Direct submission to GenBank
71-16	1l^	Yes	Supplied by Prof. Vilcek	Supplied by Prof. Vilcek	[11]
71-03	1l^	Yes	Supplied by Prof. Vilcek	Supplied by Prof. Vilcek	[11]
71-15	1l^	Yes	Supplied by Prof. Vilcek	Supplied by Prof. Vilcek	[11]
ZM-95	1m	Yes	AF526381⁺	AF526381⁺	[13]
890	2	Yes	U18059⁺	U18059⁺	[35]
15-103	2	No	AF298055		[10]
4-5174	2	No	AF298063		[10]

Reference strains used, their GenBank accession numbers and whether both 5′UTR and N^pro regions are available are indicated. Where relevant, the publications originally detailing the strains are noted. ^#N^pro typed in Vilcek et al.[10], but no sequence available in GenBank. *subtype classified by Vilcek et al.[9]. ^Sequences classified by Jackova et al.[11] and sequence information obtained directly from Professor Vilcek. ⁺Whole genome sequence extracted from GenBank.

ISSN: 1297-9716