Table 1 FMDV samples from the O/SEA/Mya98 lineage analysed in this study representing complete genomes (CG), S-fragments (S) and polyprotein open-reading frames (ORF) generated at the Pirbright Institute (PI) and the FGI Federal Centre for Animal Health (ARRIAH).
From: Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010–2011
Isolate | Specimen | Location | Collection date | Host species | GenBank accession number (source laboratory for novel data) | |
|---|---|---|---|---|---|---|
CG | O/MAY/7/2007 | Cell culture | Melaka, Malaysia | 20/10/2007 | Cattle | HQ632772 |
CG | O/TAI/22/2009 | Fluid/cell culture | Lamphun, Thailand | 18/11/2009 | Swine | KF112879: This work (PI) |
CG | O/MYA/5/2009 | Epithelial suspension | Bago, Myanmar | 10/06/2009 | Cattle | KF112880: This work (PI) |
CG | O/MOG/7/2010 | Epithelial suspension | Sukhbaatar Province. Mongolia | 06/09/2010 | Cattle | KF112881: This work (PI) |
CG | O/MOG/C-10/2010 | Cell culture | Mongolia | 01/05/2010 | Cattle | KF112882: This work (ARRIAH) |
CG | O/RUS/Jul 2010 | Cell culture | Abagaytuy, Zabajkal’skij Kray, Chita region, RF | 05/07/2010 | Swine | KF112883: This work (ARRIAH) |
CG | O/RUS/Aug 2010 | Cell culture | Zabajkal’skij Kray, Chita region, RF | 26/08/2010 | Cattle | KF112884: This work (ARRIAH) |
CG | O/JPN/1/2010 | Cell culture | Miyazaki Prefecture, Japan | 17/04/2010 | Cattle | KF112885: This work (PI) |
CG | O/SKR/4/2010 | Fluid/Vesicular | Ganghwa, Incheon, ROK | 07/04/2010 | Cattle | KF112886: This work (PI) |
CG | O/SKR/5/2010 | Fluid vesicular | Andong, Gyeongbuk, ROK | 28/11/2010 | Swine | KF112887: This work (PI) |
CG | O/DRK/31/2011 | Epithelial suspension | Pyongan, DPRK | 01/01/2011 | Cattle | KF112888: This work (PI) |
CG | O/BY/CHA/2010 | Epithelial suspension | Baiyun district, Guangzhou city, Guangdong, PRC | 15/03/2010 | Swine | JN998085 |
CG | O/GZ/CHA/2010 | Epithelial suspension | Guanzhou, Jiangxi, PRC | 15/03/2010 | Cattle | JN998086 |
CG | O/GSLX/2010 | - | Linxia, Gansu, PRC | 30/06/2010 | Swine | JQ900581 |
CG | O/CHN/Mya98/33-P | Cell culture | PRC | 30/06/2010 | Cattle | JQ973889 |
CG | O/HKN/15/2010 | Epithelial suspension | Hong Kong SAR | 24/02/2010 | Swine | KF112889: This work (PI) |
CG | O/HKN/20/2010 | Epithelial suspension | Hong Kong SAR | 03/03/2010 | Swine | HM229661: This work (PI) |
S | O/HKN/1/2010 | Epithelial suspension | Hong Kong SAR | 05/02/2010 | Swine | KF112890: This work (PI) |
S | O/HKN/4/2010 | Epithelial suspension | Hong Kong SAR | 10/02/2010 | Swine | KF112891: This work (PI) |
S | O/HKN/6/2010 | Epithelial suspension | Hong Kong SAR | 10/02/2010 | Swine | KF112892: This work (PI) |
S | O/HKN/7/2010 | Epithelial suspension | Hong Kong SAR | 22/02/2010 | Swine | KF112893: This work (PI) |
S | O/HKN/10/2010 | Epithelial suspension | Hong Kong SAR | 24/02/2010 | Swine | KF112894: This work (PI) |
S | O/HKN/12/2010 | Pericardial fluid | Hong Kong SAR | 24/02/2010 | Swine | KF112895: This work (PI) |
S | O/HKN/13/2010 | Epithelial suspension | Hong Kong SAR | 24/02/2010 | Swine | KF112896: This work (PI) |
S | O/HKN/18/2010 | Epithelial suspension | Hong Kong SAR | 01/03/2010 | Swine | KF112897: This work (PI) |
S | O/HKN/19/2010 | Tissue | Hong Kong SAR | 03/03/2010 | Swine | KF112898: This work (PI) |
ORF | O/VN/YB105/2009 | Cell culture | Yen Bai, Vietnam | 17/09/2009 | Buffalo | GU582115 |
ORF | O/VN/QB88/2009 | Cell culture | Quang Binh, Vietnam | 09/11/2009 | Cattle | GU125650 |
ORF | O/VN/LC169/2009 | - | Lao Cai, Vietnam | 15/11/2009 | - | DQ119643 |
ORF | O/VN/GL13/2006 | Cell culture | Gia Lai, Vietnam | 15/04/2006 | Cattle | GU125648 |
ORF | O/VN/SL01/2006 | Cell culture | Son La, Vietnam | 15/10/2006 | Buffalo | GU125649 |
ORF | O/VN/SL21/2006 | Cell culture | Son La, Vietnam | 15/10/2006 | Cattle | GU125647 |
ORF | O/VN/SL22/2006 | Cell culture | Son La, Vietnam | 15/10/2006 | Cattle | HM055510 |
ORF | O/HLJOC12/2003 | - | Heilongjiang, PRC | 30/06/2003 | - | DQ119643 |