From: Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins
Category | Control | ORF1 | ORF2 | ORF3 | ||||
---|---|---|---|---|---|---|---|---|
Count | % | Count | % | Count | % | Count | % | |
Raw reads | 4 654 382 | 100.00 | 5 014 372 | 100.00 | 5 887 207 | 100.00 | 4 565 856 | 100.00 |
Low-quality reads | 42 632 | 0.92 | 45 864 | 0.91 | 57 174 | 0.97 | 40 451 | 0.89 |
High-quality reads | 4 611 750 | 99.08 | 4 968 508 | 99.09 | 5 830 033 | 99.03 | 4 525 405 | 99.11 |
High-quality reads | 4 611 750 | 100.00 | 4 968 508 | 100.00 | 5 830 033 | 100.00 | 4 525 405 | 100.00 |
Clean reads (≥18 nucleotides) | 3 476 739 | 75.39 | 3 604 325 | 72.54 | 4 293 063 | 73.64 | 3 648 407 | 80.62 |
Clean reads | 3 476 739 | 100.00 | 3 604 325 | 100.00 | 4 293 063 | 100.00 | 3 648 407 | 100.00 |
miRNA | 1 205 500 | 34.67 | 861 472 | 23.90 | 623 299 | 14.52 | 1 409 182 | 38.62 |
rRNA | 698 265 | 20.08 | 775 446 | 21.51 | 1 568 539 | 36.54 | 808 436 | 22.16 |
scRNA | 4100 | 0.12 | 3292 | 0.09 | 2835 | 0.07 | 2541 | 0.07 |
snRNA | 15 446 | 0.44 | 12 003 | 0.33 | 19 892 | 0.46 | 12 971 | 0.36 |
snoRNA | 16 659 | 0.48 | 10 548 | 0.29 | 11 925 | 0.28 | 11 051 | 0.30 |
srpRNA | 332 | 0.01 | 509 | 0.01 | 1428 | 0.03 | 591 | 0.02 |
tRNA | 186 300 | 5.36 | 289 446 | 8.03 | 283 870 | 6.61 | 192 332 | 5.27 |
mRNA | 44 231 | 1.27 | 48 588 | 1.35 | 68 330 | 1.59 | 52 302 | 1.43 |
Repeat-associated small RNA | 8168 | 0.23 | 8876 | 0.25 | 10 357 | 0.24 | 9058 | 0.25 |
Unannotateda | 1 297 738 | 37.33 | 1 594 145 | 44.23 | 1 702 588 | 39.66 | 1 149 943 | 31.52 |