Gene | Primer sequence [5′-3′] | Location within genea | Amplicon size PCR (bp) | Allele size MLST (bp) | Mean GC content | No. of alleles | No. of variable sites (%) | d N /d Sratio | Simpsons index of diversity (D) |
---|---|---|---|---|---|---|---|---|---|
gpsA | fw: AGTTATGATGTGGGGACG | 75-745 | 671 | 540 | 38.3% | 9 | 11 (2.0) | 0.3610 | 0.608 |
rv: TAGCTGTAACGACGAGATCG | |||||||||
recA | fw: TTCGGTAGAATAATCTCGCG | 38-913 | 876 | 640 | 39.7% | 9 | 13 (1.6) | 0.0207 | 0.775 |
rv: TGCTATTAGTTCAGGGTCG | |||||||||
purA | fw: GATGTTTATGAGGAAGCGC | 331-1066 | 736 | 611 | 39.1% | 14 | 11 (1.8) | 0.5690 | 0.764 |
rv: AACGCATTGATTGTTGCCC | |||||||||
pta | fw: TGCTGCAGTACGTTTAGC | 90-793 | 704 | 544 | 36.6% | 9 | 12 (2.2) | 0.0419 | 0.579 |
rv: AGACACGTGCATTACCTG | |||||||||
prsA | fw: ACAAGTTCACCAGTAAGTG | 190-952 | 763 | 575 | 39.3% | 6 | 4 (0.7) | 0.0654 | 0.657 |
rv: AGAGTGTACTTACAGGAGT | |||||||||
galK | fw: TATTCCTAATGGAGCGGG | 357-1041 | 685 | 554 | 36.8% | 13 | 10 (1.8) | 0.0766 | 0.740 |
rv: AATCGCAATCGCACATCC | |||||||||
ldhA | fw: AACGGATATGAAGCTGTTGCC | 136-783 | 648 | 531 | 40.3% | 11 | 14 (2.6) | 0.3390 | 0.681 |
rv: AAGAACATCCAGTCCAACAGC |