Locus tag | Gene type | RT-qPCR 1 | á…Ÿ | RNAseq | |||||
---|---|---|---|---|---|---|---|---|---|
ex vivo | in vivo | 1 dpi | 2 dpi | 3 dpi | Product | ex vivo | in vivo | ||
logFC | logFC | ||||||||
HPNK_10441 | Virulence factor | ND2 | 4.8 | 4.2 | 3.7 | 4.6 | ABC transporter, permease protein | 4.2 | 4.0 |
HPNK_06205 | Virulence factor | ND | 4.9 | 4.6 | 2.9 | 4.9 | Hypothetical protein | 2.1 | 6.0 |
HPNK_09829 | Virulence factor | ND | 3.6 | 4.1 | 1.4 | 3.3 | Hypothetical protein | 5.2 | 2.8 |
HPNK_10446 | Virulence factor | ND | 3.3 | 3.5 | 2.4 | 3.1 | Hypothetical protein | 3.1 | 5.5 |
HPNK_11461 | Virulence factor | ND | 5.2 | 2.1 | 2.2 | 2.9 | Hypothetical protein | 1.8 | 3.8 |
HPNK_06565 | Virulence factor | ND | 5.4 | HCT 3 | HCT | 3.7 | Na+/H+ antiporter NhaC | 2.3 | 3.3 |
HPNK_01698 | Virulence factor | ND | 4.1 | 3.8 | 3.2 | 3.0 | VtaA2 | 1.6 | 3.1 |
HPNK_03728 | Key pathway | 2.3 | 5.0 | ND | ND | ND | 6-pyruvoyl tetrahydrobiopterin synthase | 2.6 | 1.7 |
HPNK_08953 | Key pathway | 4.3 | 2.4 | ND | ND | ND | ABC transporter inner membrane subunit | 7.3 | 3.4 |
HPNK_06845 | Key pathway | 3.9 | 5.3 | ND | ND | ND | Anthranilate synthase component II | 9.1 | 1.8 |
HPNK_01064 | Key pathway | 1.3 | 5.9 | ND | ND | ND | Heme exporter protein D | 1.2 | 2.0 |
HPNK_10256 | Key pathway | −2.8 | 0.6 | ND | ND | ND | PTS mannose-specific transporter subunit | −3.2 | −1.9 |
HPNK_05784 | Key pathway | −4.2 | −0.6 | ND | ND | ND | Type II citrate synthase | −4.7 | −3.4 |
HPNK_02274 | Reference | ND | - | - | - | - | BirA repressor | −0.1 | −0.1 |
HPNK_07913 | Reference | ND | - | - | - | - | MurE ligase | −0.1 | 0.1 |
HPNK_00732 | Reference | - | ND | ND | ND | ND | 50S ribosomal protein L5 | −0.5 | −1.7 |
HPNK_07703 | Reference | - | ND | ND | ND | ND | Translocation protein TolB | −0.2 | −0.4 |
HPNK_09689 | Reference | - | ND | ND | ND | ND | 50S ribosomal protein L2 | 0.7 | −0.6 |
HPNK_01728 | Reference | - | ND | ND | ND | ND | pyruvate dehydrogenase subunit E1 | 0.0 | −1.7 |