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Table 2 Nucleotide sequences of primers and probes used in this study

From: Piscine orthoreovirus (PRV) in red and melanised foci in white muscle of Atlantic salmon (Salmo salar)

Target

Primer/probe

Sequence (5’ → 3’)

Reference

PRV

S1 Fwd

TGCGTCCTGCGTATGGCACC

[20]

S1 Rev

GGCTGGCATGCCCGAATAGCA

S1 Probe

ATCACAACGCCTACCT

SAV

nsP1-Fwf

CCGGCCCTGAACCAGTT

[27]

nsP1-Rev

GTAGCCAAGTGGGAGAAAGCT

nsP1-Probe

CTGGCCACCACTTCGA

ILAV

S7 Fwd

TGGGATCATGTGTTTCCTGCTA

[30]

S7 Rev

GAAAATCCATGTTCTCAGATGCAA

S7 Probe

CACATGACCCCTCGTC

IPNV

VP3 Fwd

CGACCGACATGAACAAAATCA

[28]

VP3 Rev

AGTTGCAGCTGTATTCGCACA

VP3 Probe

TCTAGCCAACAGTGTGTACGGCCTCCC

VHSV

N Fwd

GACTCAACGGGACAGGAATGA

[29]

N Rev

GGGCAATGCCCAAGTTGTT

N Probe

TGGGTTGTTCACCCAGGCCGC

PMCV

Fwd

TTCCAAACAATTCGAGAAGCG

[25]

Rev

ACCTGCCATTTTCCCCTCTT

EF 1αβ

Fwd

TGCCCCTCCAGGATGTCTAC

[25]

Rev

CACGGCCCACAGGTACTG

Probe

AAATCGGCGGTATTGG