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Table 3 Summary of genes annotated with the three major GO terms identified from functional analysis of the differentially expressed gene lists

From: Live and inactivated Salmonella enterica serovar Typhimurium stimulate similar but distinct transcriptome profiles in bovine macrophages and dendritic cells

 

DC_L

DC_D

Mø_L

Mø_D

Inflammatory response

CCL20, CCL5, CXCL2, F3, IL1A, IL1B, IL6, KDM6B, MEFV, NFKDID, NFKBIZ, PTX3, TNF, TNFAIP3

CCL20, CCL5, CCR7, CXCL2, F3, IL6, KDM6B, MEFV, NFKB1, OLR1, TNF, TNFAIP3

CD40LG, CCL20, CCL5, CCL8, CCR7, CXCL2, CFB, F3, IL1RN, IL1A, IL1B, IL10, IL6, KDM6B, MEFV, NFDBID, NFKBIZ, OLR1, PTX3, SELP, SAA2, TNF, TNFAIP3, TNFAIP6

CCL20, CCL5, CCL8, CCR4, CCR7, CXCL2, CFB, F3, FOS, IL1A, IL1B, IL10, IL6, KDM6B, MEFV, NFKBID, NFKBIZ, OLR1, PTX3, SELP, SAA2, TNF, TNFAIP3, TNFAIP6

Regulation of programmed cell death

BCL2A1, BIRC3, BTG2, CFLAR, CLCF1, CSF2, DUSP1, F3, GCLC, IER3, INHBA, IFIH1, IL1A, IL1B, IL6, NFKBIA, NR4A1, NR4A2, PMAIP1, PIM1, PTGS2, SOCS3, TNF, TNFAIP3, TRAF1, TXNIP, VEGFA

BCL2A1, BIRC3, BTG2, CFLAR, CSF2, F3, GCH1, GCLC, IER3, IL6, NFKB1, NFKBIA, NR4A1, NR4A2, PPIF, PMAIP1, PIM3, PLEKHF1, PTGS2, TNF, TNFAIP3, TRAF1, VEGFA

BCL2A1, BTG2, CD40LG, CFLAR, CLCF1, CD40LG, CSF2, DUSP1, F3, GDNF, IER3, INHBA, ID3, IFNG, IL1A, IL1B, IL10, IL6, LIG4, LTA, NR4A1, PPIF, PMAIP1, PIM1, PHLDA1, PTGS2, SOCS3, TNF, TNFAIP3, TRAF1, TXNIP, VEGFA

BCL2A1, BIRC3, BTG2, CFLAR, CLCF1, CSF2, DLC1, DUSP1, F3, GCLC, GDNF, IER3, INHBA, ID3, IFIH1, IL1A, IL1B, IL10, IL6, LIG4, MX1, NR4A1, PPIF, PMAIP1, PIM1, PLEKHF1, PHLDA1, PTGS2, SERPINB2, SOCS3, TNF, TNFAIP3, TRAF1, VEGFA

Regulation of transcription

BAZ1A, BHLHE41, BTG2, CD80, ETS2, GCLC, GZF1, ID2, INHBA, IL1B, IL6, IRF1, KDM6B, KLF5, NFIL3, NFKBIA, NFKBIZ, NR4A1, NR4A2, NR4A3, PIM1, PNRC1, PRDM1, RYBP, SKIL, TNF, TXNIP, VEGFA

BAZ1A, BTG2, CARHSP1, CD80, ETS2, ETV3, FOSB, FOXF1, GCLC, GZF1, ICAM1, IL6, IRF1, IRF8, KDM6B, KLF5, MAFF, NFATC1, NFIL3, NFKB1, NFKB2, NFKBIA, NR4A1, NR4A2, NR4A3, PRDM1, RYBP, SAFB2, SFRQ, SKIL, TLE1, TNF, VEGFA, ZBTB10

ATF3, BHLHE40, BHLHE41, BTG2, CD80, CEBPA, CEBPD, CSRNP1, EGR1, EHF, ETS2, GDNF, GZF1, HHEX, ICAM1, ID2, ID3, IFNG, IL1B, IL10, IL6, INHBA, IRF1, KDM6B, KLF13, MAFF, MED4, MTERF, NFATC1, NFIL3, NFKB2, NFKBIZ, NR4A1, PHF10, PPARGC1B, PIM1, PRDM1, RYBP, TNF, TXNIP, VEGFA, ZNF175, ZNF181, ZNF200, ZNF235, ZNF565, ZNF567, ZNF582, ZNF677, ZNF814

ATF3, BAZ1A, BHLHE41, BTG2, CCNL1, CD80, CEBPD, CSRNP1, EHF, ETS2, ETV3, FOS, FOSB, GCLC, GDNF, GTF2B, GZF1, ICAM1, ID1, ID2, ID3, IL1B, IL10, IL6, INHBA, IRF1, IRF4, KDM6B, KLF5, MAFF, NFATC1, NFKB2, NFKBIZ, NR4A1, PIM1, PRDM1, RYBP, SFPQ, SIK1, SKIL, TNF, VEGFA, ZNF132, ZNF582

  1. Differentially expressed genes (FDR < 0.05, fold change >1.8) identified for DC treated with live (DC_L) and inactivated (DC_D) S. Typhimurium and Mø treated with live (Mø _L) and inactivated (Mø _D). Genes are listed by HUGO gene symbol and were identified from functional analysis using human gene annotation data. Those indicated in italics were also identified from analysis using bovine gene annotation data.