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Table 2 Abortive agents isolated in pure culture/large number and the corresponding most abundant genera found by NGS

From: Amplicon sequencing of bacterial microbiota in abortion material from cattle

Sample ID

Organ

Abortive agents isolated in pure culture

Most abundant genera found by NGS (≤ 75% of the reads)

13Ue197_Pl

PL

T. pyogenes

Fusobacterium (74.04%), Trueperella (11.28%), others (14.71%)

13Ue755_Pl

PL

E. coli

Enterobacteriaceae a (94.2%), others (5.8%)

13Ue1008_Pl

PL

V. metschnikovii

Vibrio (89.92%), others (10.08%)

13Ue1137_Mg

AC

S. uberis

Streptococcus (99.62%), others (0.38%)

13Ue1137_Pl

PL

S. uberis

Streptococcus (99.33%), others (0.67%)

13Ue1143_Mg

AC

E. coli

Enterobacteriaceae a (99.17%), others (0.83%)

13Ue1143_Pl

PL

E. coli

Enterobacteriaceae a (96.18%), others (3.82%)

13Ue1275_Pl

PL

S. uberis

Streptococcus (37.24%), Enterobacteriaceaea (25.92%), Lactococcus (21.27%), others (15.57%)

13Ue1450_Mg

AC

L. lactis

Lactococcus (86.52%), others (13.48%)

14A26_Mg

AC

C. fetus subsp. fetus

Campylobacter (60.38%), Pseudomonas (36.03%), others (3.59%)

14A26_Pl

PL

C. fetus subsp. fetus

Pseudomonas (98.97%), others (1.03%)