From: Amplicon sequencing of bacterial microbiota in abortion material from cattle
Sample ID | Placentitis | Necrosis | Type of infiltrate | Vasculitis | Presence of ICBa | Presence of ECBb | Most abundant genera found by NGS (≤ 75% of the reads) | Comments |
---|---|---|---|---|---|---|---|---|
12Ue1096_Pl | Mild | Mild | Mixed | Yes | Yes | Yes | Pseudomonas (86.72%), others (13.28%) | Â |
12Ue1503_Pl | No | Moderate | No | No | No | Yes | Pseudomonas (91.26%), others (8.74%) | Pseudomonas (99.68%) in the abomasal content |
13Ue218_Pl | No | No | No | No | No | Yes | Clostridium (29.94%), Enterococcus (9.71%), Ruminococcaceae a (9.67%), Flavobacterium (6.89%), Bacteroidales b (5.18%), Enterobacteriaceae (4.46%), Pseudomonas (3.32%), Succinivibrio (2.88%), RF16 (2.43%), others (22.63%) | Â |
13Ue238_Pl | NA | NA | NA | NA | NA | NA | Psychrobacter (30.22%), Shewanella (29.58%), Flavobacteriales b (12.76%), Pseudomonadaceae a (4.50%), others (22.94%) | Severe autolysis |
13Ue491_Pl | Mild | Moderate | Mononuclear | No | No | No | Bacteroides (39.09%), Pseudomonas (26%), Shewanella (21.69%), others (13.22%) | Â |
13Ue851_Pl | Moderate | Moderate | Neutrophilic | Yes | No | No | Enterobacteriaceae a (46.46%), Enterobacteriales b (24.33%), Serratia (16.14%), others (13.07%) | Â |
13Ue1008_Pl | Moderate | Moderate | Mixed | Yes | No | Yes | Vibrio (89.92%), others (10.08%) | V. metschnikovii isolated in culture |
13Ue1137_Pl | Moderate | Moderate | Mixed | Yes | No | Yes | Streptococcus (99.33%), others (0.67%) | Streptococcus (99.62%) in the abomasal content, S. uberis isolated in culture |
13Ue1143_Pl | Mild | Mild | Neutrophilic | No | No | Yes | Enterobacteriaceae a (96.19%), others (3.81%) | Enterobacteriaceae a (99.17%) in the abomasal content. E. coli isolated in culture |
13Ue1218_Pl | Mild | Mild | Mixed | Yes | No | Yes | Clostridium (28.33%), Cetobacterium (13.16%), Enterobacteriaceae a (13.02%), Peptostreptococcaceae a (12.42%), Aeromonadaceae a (9.8%), others (23.27%) | High level of contamination with plants and feces |
13Ue1275_Pl | Mild | Mild | Mixed | Yes | No | No | Streptococcus (37.24%), Enterobacteriaceae a (25.92%), Lactococcus (21.27%), others (15.57%) | S. uberis isolated in pure culture |
13Ue1631_Pl | NA | NA | NA | NA | NA | NA | Pseudomonadales b (16.87%), Pseudomonadaceae a (16.24%), Propionibacteriaceae a (11.03%), Acinetobacter (9.13%), Aeromonadaceae a (6.81%), Candidatus Portiera (5.66%), Ruminococcaceae a (3.62%), Psychrobacter (3.33%), others (23.34%) | Severe autolysis |
13Ue1644_Pl | No | No | No | No | No | Â | Psychrobacter (83.99%), others (16.01%) | Â |
13Ue1714_Pl | NA | NA | NA | NA | NA | NA | Actinobacillus (38.74%), Clostridium (15.78%), Streptococcus (14.54%), Enterobacteriaceae a (7.83%), others (23.11%) | Severe autolysis |
13Ue1756_Pl | NA | NA | NA | NA | NA | NA | Psychrobacter (33.24%), Pseudomonadaceae a (15.06%), Aeromonadaceae a (13.06%), Acinetobacter (12.23%), Vibrio (5.53%), others (20.88%) | Severe autolysis |
14A20_Pl | Mild | Mild | Mixed | No | No | Yes | Aeromonadaceae a (73%), Pseudomonas (26.26%), others (0.74%) | Â |
14A28_Pl | NA | NA | NA | NA | NA | NA | Shewanella (24.04%), Camomonas (17.94%), Psychrobacter (9.97%), Pseudomonadaceae a (8.82%), Pseudomonas (4.49%), Acinetobacter (4.5%), Wautersiella (3.66%), Staphylococcus (3.64%), others (22.94%) | Severe autolysis |