Table 1 Summary of the 39 B. hyodysenteriae isolates sequenced in this project
Isolate | Year | Country | Farm | Haemolysis strength | Clinical background | Sequence type | Plasmid type | Clone number | References |
|---|---|---|---|---|---|---|---|---|---|
JR88 | 2016 | Germany | Farm V | Weak | Unknown | 246 | 1 | 1 | This study |
BH23 | 2010 | UK | Farm BF (UK) | Weak | Surveillance | 167 | 1 | 2 | [32] |
D28 | 2011 | Belgium | Farm B1 (Belgium) | Weak | Diarrhoea | 172 | 1 | 3 | [18] |
JR11 | 2014 | Germany | Farm C | Weak | Surveillance | 134 | 1 | 4 | [17] |
JR12 | 2014 | Germany | Farm C | Weak | Surveillance | 134 | 1 | 4 | [17] |
JR13 | 2014 | Germany | Farm C | Weak | Surveillance | 134 | 1 | 4 | [17] |
JR15 | 2014 | Germany | Farm M | Weak | Diarrhoea | 135 | 1 | 5 | This study |
JR47 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR48 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR51 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR53 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR54 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR56 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR57 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR58 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR59 | 2015 | Germany | Farm R1 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR60 | 2015 | Germany | Farm R2 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR61 | 2015 | Germany | Farm R2 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR63 | 2015 | Germany | Farm R2 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR64 | 2015 | Germany | Farm R3 | Weak | Surveillance | 191 | 1 | 6 | This study |
JR65 | 2015 | Germany | Farm R4 | Weak | Diarrhoea | 191 | 1 | 6 | This study |
JR76 | 2016 | Germany | Farm R4 | Weak | Diarrhoea | 191 | 1 | 6 | This study |
JR49 | 2015 | Germany | Farm R1 | Weak | Surveillance | 192 | 1 | 7 | This study |
JR50 | 2015 | Germany | Farm R1 | Weak | Surveillance | 192 | 1 | 7 | This study |
JR71 | 2016 | Germany | Farm W2 | Weak | Surveillance | 219 | 1 | 8 | This study |
AWT1-5 | 2016 | Germany | Farm W1 | Weak | Surveillance | 219 | 1 | 8 | This study |
AWT1-3 | 2016 | Germany | Farm W2 | Weak | Surveillance | 219 | 1 | 8 | This study |
AWT1-6 | 2016 | Germany | Farm W3 | Weak | Surveillance | 219 | 1 | 8 | This study |
AWT1-7 | 2016 | Germany | Farm W3 | Weak | Surveillance | 219 | 1 | 8 | This study |
JR79 | 2015 | Germany | Farm W4 | Weak | Diarrhoea | 219 | 1 | 8 | This study |
JR80 | 2015 | Germany | Farm W4 | Weak | Diarrhoea | 219 | 1 | 8 | This study |
JR73 | 2017 | Germany | Farm Z | Weak | Surveillance | Partial1 | 4 | 9 | This study |
JR74 | 2017 | Germany | Farm Z | Weak | Surveillance | Partial1 | 4 | 9 | This study |
JR77 | 2016 | Germany | Farm I | Weak | Surveillance | Partial2 | 4 | 10 | This study |
JR72 | 2017 | Germany | Farm II | Weak/stronga | Surveillance | Partial3 | 1 | n/a | This study |
AWT2–4 | 2015 | Spain | Farm X | Strong | Swine dysentery | Partial4 | 4 | n/a | This study |
JR22 | 2014 | Germany | Farm N | Strong | Diarrhoea | 52 | 1 | n/a | This study |
JR31 | 2014 | Germany | Farm O | Strong | Unknown | 112 | 4 | n/a | This study |
JR32 | 2014 | Germany | Farm P | Strong | Diarrhoea | 52 | 1 | n/a | This study |
JR42 | 2014 | Germany | Farm Q | Strong | Diarrhoea | 139 | 4 | n/a | This study |
JR96 | 2015 | Germany | Farm S | Strong | Swine dysentery | 52 | 1 | n/a | This study |
JR97 | 2015 | Germany | Farm T | Strong | Swine dysentery | 52 | 1 | n/a | This study |
JR98 | 2015 | Germany | Farm U | Strong | Swine dysentery | 112 | 4 | n/a | This study |