Skip to main content

Table 4 Impact assessment of the non-synonymous V2G and V182I polymorphisms using Polyphen-2, PROVEAN, PANTHER, Meta-SNP and PredictSNP.

From: Novel polymorphisms in the prion protein gene (PRNP) and stability of the resultant prion protein in different horse breeds

Polymorphism

Method

Score

Prediction

c.5T>G

(V2G)

PolyPhen-2

0.033

Benign

PROVEAN

2.034

Neutral

PANTHER

97

Possibly benign

 

Meta-SNP

0.034

Neutral

 

PredictSNP

83(expected accuracy)

Neutral

c.544G>A

(V182I)

PolyPhen-2

0.084

Benign

PROVEAN

−0.174

Neutral

PANTHER

220

Possibly damaging

 

Meta-SNP

0.26

Neutral

 

PredictSNP

60(expected accuracy)

Neutral