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Table 1 Animal sample information of four DSN animals whose unmapped sequencing data showed the presence of Bovine parvovirus 3. The assembly information includes the length of the assemblies generated from unmapped reads that could be mapped to the Bovine parvovirus 3 genome (full genome size = 5.33 kb), the genome coverage, and the average k-mer depth of the respective assembly.

From: Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle

Animal sample information

Assembly information

Sex

Birth year

Farm

Tissue

Collection (year/month)

Number of scaffolds

Length (kb)

Genome coverage (%)

K-mer depth

Bull

2015

1

Blood

2015/10

1

5.32

99.8

41.47

Cow

2015

2

Ear

2017/08

2

5.20

97.6

6.64

Cow

2014

3

Ear

2017/08

1

5.50

100.0

11.25

Cow

2015

2

Ear

2017/08

1

0.61

11.4

2.41